PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G143300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 224aa    MW: 26334.1 Da    PI: 9.6534
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G143300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-171160148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                       rg+W++eEd+ll+++++++G g+W++++ +    ++R++k+c++rw +yl
  Aqcoe6G143300.1.p 11 RGKWSEEEDDLLKKCIEKYGEGNWHKVPPRAVsgLKRCRKSCRLRWCNYL 60
                       89**********************************************97 PP

2Myb_DNA-binding43.86e-1466110147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r  ++ +E +l+++  k+lG++ W++Ia++++ gRt++++k+rw ++
  Aqcoe6G143300.1.p  66 RREFSWDEIDLIIKMQKLLGNR-WSLIAARLP-GRTANDIKNRWTTH 110
                        56899*****************.*********.***********886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.913664IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-21663IPR009057Homeodomain-like
SuperFamilySSF466891.72E-278107IPR009057Homeodomain-like
SMARTSM007171.8E-151062IPR001005SANT/Myb domain
PfamPF002496.3E-161160IPR001005SANT/Myb domain
CDDcd001678.72E-101360No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2064115IPR009057Homeodomain-like
PROSITE profilePS5129417.90465115IPR017930Myb domain
SMARTSM007174.9E-1465113IPR001005SANT/Myb domain
PfamPF002491.7E-1266110IPR001005SANT/Myb domain
CDDcd001679.42E-968111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEQTNSSSLK RGKWSEEEDD LLKKCIEKYG EGNWHKVPPR AVSGLKRCRK SCRLRWCNYL  60
NPNTNRREFS WDEIDLIIKM QKLLGNRWSL IAARLPGRTA NDIKNRWTTH ISKSLRKNQE  120
KQTETATPKI KAIKPKPLTF SQNSPWMKSR LTEKAIQREK LHSNSLLGFQ KEQTTSLWEG  180
ITFSEEDILG CTDEFEMESF FDELTKPEKT EMCLDYLNIW KWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A7e-19111182106MYB3
3zqc_D7e-19111182106MYB3
3zqc_G7e-19111182106MYB3
3zqc_J7e-19111182106MYB3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9080900.0FJ908090.1 Aquilegia formosa R2R3-myb transcription factor (MYB12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621572.14e-57purple HAZE protein
SwissprotQ9FNV98e-50MY113_ARATH; Transcription factor MYB113
TrEMBLC4PAV21e-126C4PAV2_AQUFO; R2R3-myb transcription factor
STRINGVIT_14s0006g01290.t012e-54(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-47myb domain protein 113